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st: Cox model with a segmented time-dependent covariate
From
Marta Garcia-Granero <[email protected]>
To
[email protected]
Subject
st: Cox model with a segmented time-dependent covariate
Date
Wed, 15 Jan 2014 19:27:25 +0100
I am trying to replicate some SPSS commands in Stata. This data were
modified from David Collett (2003) Modelling Survival Data in Medical
Research (Chapman & Hall/CRC Texts in Statistical Science), and show a
hypothetical clinical trial on 12 patients. I want to test if treatment
is significant, adjusted for age and ln(bilirrubin). Ln(bilirrubin) were
measured 3 times: at baseline (lbr0); approximately at 3 months -with
the exact day recorded in t1 (lbr1); and approximately at 6 months -
with exact day recorded in t2 (lbr2).
+----------------------------------------------------------------------------+
| patient time status treatment age lbr0 t1 lbr1
t2 lbr2 |
|----------------------------------------------------------------------------|
1. | 1 281 Died Placebo 46 3.2 47 3.8
184 4.9 |
2. | 2 604 Alive Placebo 57 3.1 94 2.9
187 3.1 |
3. | 3 457 Died Placebo 56 2.2 61 2.8
97 2.9 |
4. | 4 384 Died Placebo 65 3.9 92 4.7
194 4.9 |
5. | 5 341 Alive Placebo 73 2.8 87 2.6
192 2.9 |
|----------------------------------------------------------------------------|
6. | 6 842 Died Placebo 64 2.4 94 2.3
197 2.8 |
7. | 7 1514 Died Treatment 69 2.4 74 2.9
202 3 |
8. | 8 182 Alive Treatment 62 2.4 90 2.5
182 2.9 |
9. | 9 1121 Died Treatment 71 2.5 101 2.5
410 2.7 |
10. | 10 1411 Alive Treatment 69 2.3 182 2.2
847 2.8 |
|----------------------------------------------------------------------------|
11. | 11 814 Died Treatment 77 3.8 167 3.9
498 4.3 |
12. | 12 1071 Died Treatment 58 3.1 108 2.8
187 3.4 |
+----------------------------------------------------------------------------+
With SPSS, I had to define a time varying covariate (T_COV_) and add it
to the model:
TIME PROGRAM.
COMPUTE T_COV_ = (T_<t1)*lbr0 + (T_>=t1&T_<t2)*lbr1 + (T_>=t2)*lbr2.
COXREG time
/STATUS=status(1)
/CONTRAST (treatment)=Indicator
/METHOD=ENTER T_COV_ treatment age.
In SPSS, T_ is the same as Stata's _t.
This is the output:
coef se HR ----95%CI------
LR de sig
T_COV_ 4.533 2.488 93.05 0.71 12192.54 10.865 1
0.001
Treatment 4.749 2.860 115.50 0.42 31421.66 5.814 1
0.016
Age -0.078 0.094 0.93 0.77 1.11 0.808 1 0.369
With Stata, I suspect I have to use, somehow, -stsplit- and -stjoin- ,
but I can't figure how (even though I have used help stsplit, and read
the whole PDF on stcox).
Any hints?
Thanks,
Marta Garcia-Granero
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