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From |
"Roger B. Newson" <r.newson@imperial.ac.uk> |

To |
"statalist@hsphsun2.harvard.edu" <statalist@hsphsun2.harvard.edu>, tiago.pereira@mbe.bio.br |

Subject |
st: New versions of -qqvalue- and -smileplot- on SSC |

Date |
Thu, 11 Oct 2012 15:16:54 +0100 |

http://www.stata.com/statalist/archive/2012-03/msg00726.html for more about this correspondence.

(1-p)^(1/m)

Best wishes Roger ----------------------------------------------------------------------------------- package qqvalue from http://www.imperial.ac.uk/nhli/r.newson/stata10 ----------------------------------------------------------------------------------- TITLE

DESCRIPTION/AUTHOR(S) qqvalue is similar to the R package p.adjust. It inputs a single variable, assumed to contain P-values calculated for multiple comparisons, in a dataset with 1 observation per comparison. It outputs a new variable, containing the q-values corresponding to these P-values, calculated by inverting a multiple-test procedure specified by the user. These q-values represent, for each corresponding P-value, the minimum uncorrected P-value threshold for which that P-value would be in the discovery set, assuming that the specified multiple-test procedure was used on the same set of input P-values to generate a corrected P-value threshold. These minimum uncorrected P-value thresholds may represent familywise error rates or false discovery rates, depending on the procedure used. Optionally, qqvalue may output other variables, containing the various intermediate results used in calculating the q-values. The multiple-test procedures available for qqvalue are a subset of those available using the multproc module of the smileplot package, which can be downloaded from SSC. Author: Roger Newson Distribution-Date: 08October2012 Stata-Version: 10 INSTALLATION FILES (click here to install) qqvalue.ado qqvalue.sthlp ----------------------------------------------------------------------------------- (click here to return to the previous screen) ----------------------------------------------------------------------------------- package smileplot from http://www.imperial.ac.uk/nhli/r.newson/stata10 ----------------------------------------------------------------------------------- TITLE smileplot: Multiple test procedures and smile plots DESCRIPTION/AUTHOR(S)

procedures) or the false discovery rate (eg the Simes, Benjamini-Liu,

and its Stata 7 version smileplot7, work by calling multproc and then

Author: Roger Newson Distribution-Date: 09october2012 Stata-Version: 10 INSTALLATION FILES (click here to install) multproc.ado multproc.sthlp smileplot.ado smileplot.sthlp smileplot7.ado smileplot7.sthlp ----------------------------------------------------------------------------------- (click here to return to the previous screen) -- Roger B Newson BSc MSc DPhil Lecturer in Medical Statistics Respiratory Epidemiology and Public Health Group National Heart and Lung Institute Imperial College London Royal Brompton Campus Room 33, Emmanuel Kaye Building 1B Manresa Road London SW3 6LR UNITED KINGDOM Tel: +44 (0)20 7352 8121 ext 3381 Fax: +44 (0)20 7351 8322 Email: r.newson@imperial.ac.uk Web page: http://www.imperial.ac.uk/nhli/r.newson/ Departmental Web page: http://www1.imperial.ac.uk/medicine/about/divisions/nhli/respiration/popgenetics/reph/ Opinions expressed are those of the author, not of the institution. * * For searches and help try: * http://www.stata.com/help.cgi?search * http://www.stata.com/support/faqs/resources/statalist-faq/ * http://www.ats.ucla.edu/stat/stata/

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