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Re: st: Population attributable fractions (PAFs) in discrete-time survival analysis. -punaf-


From   "Roger B. Newson" <r.newson@imperial.ac.uk>
To   statalist@hsphsun2.harvard.edu
Subject   Re: st: Population attributable fractions (PAFs) in discrete-time survival analysis. -punaf-
Date   Mon, 01 Jul 2013 11:56:30 +0100

Yes, you can use -punaf- after a generalized linear model (GLM) with a complementary log-log link and a binomial error function. Or after any other GLM that gives positive-valued conditional expectations (which includes proportions and also Gamma and inverse-Gaussian means).

For proportional-hazard models (and also for case-control data), there is a package -punafcc-, which you can also download from SSC, and which estimates population attributable hazard factions (after proportional-hazard regressions), or population attributable fractions (after logit regressions on case-control data).

Angelo has not given the Samuelsen & Eide (2008) reference on PAHFs in full. However, I would guess that the PAHFs of that reference would be either the same as, or similar to, those produced by -punafcc-. I would very much like to know the full reference, so I can read it and find out more.

I hope this helps.

Best wishes

Roger

Roger B Newson BSc MSc DPhil
Lecturer in Medical Statistics
Respiratory Epidemiology and Public Health Group
National Heart and Lung Institute
Imperial College London
Royal Brompton Campus
Room 33, Emmanuel Kaye Building
1B Manresa Road
London SW3 6LR
UNITED KINGDOM
Tel: +44 (0)20 7352 8121 ext 3381
Fax: +44 (0)20 7351 8322
Email: r.newson@imperial.ac.uk
Web page: http://www.imperial.ac.uk/nhli/r.newson/
Departmental Web page:
http://www1.imperial.ac.uk/medicine/about/divisions/nhli/respiration/popgenetics/reph/

Opinions expressed are those of the author, not of the institution.

On 01/07/2013 00:13, Angelo Belardi wrote:
Dear All,

I am working on discrete-time proportional hazard models with a
non-parametric baseline hazard function, using -cloglog- in
person-period formatted datasets.

I would like to additionally calculate population attributable
fractions (PAFs) in these models.
However, I have never worked with PAFs in survival analyses before and
therefore don't know
which functions to use and how to correctly interpret the results.

Previously, I calculated PAFs in STATA with the -punaf- package from
Roger Newson, e.g.
for logistic regressions.

Can I use -punaf- here as well, just after calculating the estimates
over -cloglog-?

Or is there another function/package for this situation?

Or would it be better to calculate population attributable hazard
fractions (PAHFs) as described in Samuelsen & Eide (2008)?


Thanks for any help or advice on the subject.

Regards,
Angelo


Ref:
S. O. Samuelsen, G. E. Eide, Statist. Med. 27, 1447 (2008).
http://onlinelibrary.wiley.com/doi/10.1002/sim.3022/abstract
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