st: RE: RE: unpaired regression

[David Airey <david.airey@vanderbilt.edu>]

> Can anyone comment on whether Scott's suggestion would be appropriate 
> for
> the problem I'm working on?  The difference in R^2 between the samples
> indicates that it might be problematic.

I'm not clear what the questions/hypotheses are. You have a grouping, 
and two measures. Are you thinking of these two measures as response or 
predictor? If response, then what about a MANOVA framework, where you 
have batch as X1, and replicated assays as Y1 and Y2?

-Dave

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