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st: Hardy-Weinberg for multiallelic loci

From   "Doody, David R" <[email protected]>
To   "'[email protected]'" <[email protected]>
Subject   st: Hardy-Weinberg for multiallelic loci
Date   Fri, 11 Mar 2005 15:54:39 -0800

I searched the archives for an answer to this question, but was unsuccessful.  Sorry if it's been discussed before.  I'm trying to test my case-control data to confirm they're in Hardy-Weinberg equilibrium.  I can use genhw for SNPs, but I have a few multiallelic loci.  I've seen various other packages which seem to use a method proposed by Guo and Thompson (using Markov chain methods?), but they require extra effort to get the data into a format for those packages to work.  I'm wondering if anyone has developed programs for this method within Stata?  Or is there another method which is preferred for testing HWE for multiallelic loci that I should know about?  Thanks in advance.
Dave Doody 
[email protected]

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