___ ____ ____ ____ ____ tm /__ / ____/ / ____/ ___/ / /___/ / /___/ 9.0 Copyright 1984-2005 Statistics/Data Analysis StataCorp 4905 Lakeway Drive College Station, Texas 77845 USA 800-STATA-PC http://www.stata.com 979-696-4600 stata@stata.com 979-696-4601 (fax) 3-user Stata for Linux64 (network) perpetual license: Serial number: 999 Licensed to: Brian P. Poi, Ph.D. StataCorp LP Notes: 1. (-m# option or -set memory-) 1.00 MB allocated to data 2. Command line editing disabled 3. Stata running in batch mode running /home/bpp/bin/profile.do ... . do ratkow2.do . /* NIST/ITL StRD > Dataset Name: Ratkowsky2 (Ratkowsky2.dat) > > File Format: ASCII > Starting Values (lines 41 to 43) > Certified Values (lines 41 to 48) > Data (lines 61 to 69) > > Procedure: Nonlinear Least Squares Regression > > Description: This model and data are an example of fitting > sigmoidal growth curves taken from Ratkowsky (1983). > The response variable is pasture yield, and the > predictor variable is growing time. > > > Reference: Ratkowsky, D.A. (1983). > Nonlinear Regression Modeling. > New York, NY: Marcel Dekker, pp. 61 and 88. > > > > > > Data: 1 Response (y = pasture yield) > 1 Predictor (x = growing time) > 9 Observations > Higher Level of Difficulty > Observed Data > > Model: Exponential Class > 3 Parameters (b1 to b3) > > y = b1 / (1+exp[b2-b3*x]) + e > > > > Starting Values Certified Values > > Start 1 Start 2 Parameter Standard Deviation > b1 = 100 75 7.2462237576E+01 1.7340283401E+00 > b2 = 1 2.5 2.6180768402E+00 8.8295217536E-02 > b3 = 0.1 0.07 6.7359200066E-02 3.4465663377E-03 > > Residual Sum of Squares: 8.0565229338E+00 > Residual Standard Deviation: 1.1587725499E+00 > Degrees of Freedom: 6 > Number of Observations: 9 > */ . . clear . . scalar N = 9 . scalar df_r = 6 . scalar df_m = 3 . . scalar rss = 8.0565229338E+00 . scalar rmse = 1.1587725499E+00 . . scalar b1 = 7.2462237576E+01 . scalar seb1 = 1.7340283401E+00 . scalar b2 = 2.6180768402E+00 . scalar seb2 = 8.8295217536E-02 . scalar b3 = 6.7359200066E-02 . scalar seb3 = 3.4465663377E-03 . . qui input double(y x) . . nl ( y = {b1} / (1+exp({b2}-{b3}*x)) ), init(b1 100 b2 1 b3 0.1) eps(1e-10) (obs = 9) Iteration 0: residual SS = 19915.85 Iteration 1: residual SS = 6184.434 Iteration 2: residual SS = 6178.702 Iteration 3: residual SS = 6175.971 Iteration 4: residual SS = 6167.185 Iteration 5: residual SS = 6164.692 Iteration 6: residual SS = 6142.645 Iteration 7: residual SS = 6111.21 Iteration 8: residual SS = 6028.496 Iteration 9: residual SS = 5985.768 Iteration 10: residual SS = 4696.54 Iteration 11: residual SS = 1943.7 Iteration 12: residual SS = 1210.456 Iteration 13: residual SS = 10.19422 Iteration 14: residual SS = 8.056614 Iteration 15: residual SS = 8.056523 Iteration 16: residual SS = 8.056523 Iteration 17: residual SS = 8.056523 Iteration 18: residual SS = 8.056523 Iteration 19: residual SS = 8.056523 Source | SS df MS Number of obs = 9 -------------+------------------------------ F( 3, 6) = 4521.89 Model | 18215.3637 3 6071.78789 Prob > F = 0.0000 Residual | 8.05652293 6 1.34275382 R-squared = 0.9996 -------------+------------------------------ Adj R-squared = 0.9993 Total | 18223.4202 9 2024.82447 Root MSE = 1.158773 Res. dev. = 24.54421 ------------------------------------------------------------------------------ y | Coef. Std. Err. t P>|t| [95% Conf. Interval] -------------+---------------------------------------------------------------- b1 | 72.46224 1.734027 41.79 0.000 68.21923 76.70525 b2 | 2.618077 .0882953 29.65 0.000 2.402026 2.834128 b3 | .0673592 .0034466 19.54 0.000 .0589258 .0757926 ------------------------------------------------------------------------------ (SEs, P values, CIs, and correlations are asymptotic approximations) . . assert N == e(N) . assert df_r == e(df_r) . assert df_m == e(df_m) . . lrecomp _b[b1] b1 _b[b2] b2 _b[b3] b3 () /* > */ _se[b1] seb1 _se[b2] seb2 _se[b3] seb3 () /* > */ e(rmse) rmse e(rss) rss _b[b1] 8.0 _b[b2] 7.8 _b[b3] 7.6 ------------------------- min 7.6 _se[b1] 6.2 _se[b2] 6.0 _se[b3] 6.3 ------------------------- min 6.0 e(rmse) 10.4 e(rss) 11.8 . . end of do-file