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Re: st: Clustering with Sequence analysis/optimal matching

From (Brendan Halpin)
Subject   Re: st: Clustering with Sequence analysis/optimal matching
Date   Thu, 22 Mar 2012 08:52:23 +0000

On Thu, Mar 22 2012, Ulrich Kohler wrote:

> If the problem arises due to some
> features of distance matrix created by -sqom- I would be happy to hear
> what I can do about it. 

My comment about a defective distance matrix (which is probably not the
cause of this problem, but is a possiblity) was based on the fact that a
substitution matrix that implies a non-metric space between the states
may result in a non-metric distance matrix. This would not reflect a
fault in -sqom-.

Brendan Halpin,   Department of Sociology,   University of Limerick,   Ireland
Tel: w +353-61-213147  f +353-61-202569  h +353-61-338562;  Room F1-009 x 3147    ULSociology on Facebook:         twitter:@ULSociology
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