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Re: st: Manhattan Plots in Stata (Genetics)


From   Roger Newson <r.newson@imperial.ac.uk>
To   statalist@hsphsun2.harvard.edu
Subject   Re: st: Manhattan Plots in Stata (Genetics)
Date   Thu, 22 Sep 2011 17:18:05 +0100

Yes, I am working on GWAS data as I speak. (My new Stata/MP Version 12 allows me to do this.) I have installed -manhattan- and will have a look at it later. In the meantime, thanks for letting us all know.

Best wishes

Roger


Roger B Newson BSc MSc DPhil
Lecturer in Medical Statistics
Respiratory Epidemiology and Public Health Group
National Heart and Lung Institute
Imperial College London
Royal Brompton Campus
Room 33, Emmanuel Kaye Building
1B Manresa Road
London SW3 6LR
UNITED KINGDOM
Tel: +44 (0)20 7352 8121 ext 3381
Fax: +44 (0)20 7351 8322
Email: r.newson@imperial.ac.uk
Web page: http://www.imperial.ac.uk/nhli/r.newson/
Departmental Web page:
http://www1.imperial.ac.uk/medicine/about/divisions/nhli/respiration/popgenetics/reph/

Opinions expressed are those of the author, not of the institution.

On 22/09/2011 16:16, irishcocacola wrote:
Anyone out there using Stata for genome wide association studies (GWAS)? Do
you have an interest in an ado file program that allows you to create
manhattan plots in Stata?

I have written one and would like to distribute it and get feedback.

You can install using this (it also includes a help file).
net install http://www.thestringery.com/elwoodcook/manhattan.pkg

Please let me know what you think.

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