# Re: st: Factor analysis: Stata vs. SPSS - Different results

 From khigbee@stata.com To statalist@hsphsun2.harvard.edu Subject Re: st: Factor analysis: Stata vs. SPSS - Different results Date Tue, 27 Sep 2005 16:30:56 -0500

```Hervé Stolowy <stolowy@hec.fr> asks:

> When I run a factor analysis with Stata
>
> factor var1 var2 ... varN, pcf mineigen(1)
> rotate, varimax
>
> and with SPSS (Analyze>Data reduction>Extraction: Principal
> components>Rotation: varimax),
>
> in the Rotated Factor Loadings, I find that some factors have the
> same figures in Stata and SPSS, but with opposite signs. This
> does not happen for all factors but only some of them. The others
> are similar in both results.
>
> Being a beginner, I would expect to find the same matrix with
> both software.
>
> There is probably a logical explanation but I miss it.

I would have guessed (given the words I am seeing for your SPSS
command selection) that you were running in SPSS the equivalent
of Stata's -pca- followed by -rotate-.  But, I could easily be
comment on that?

I just want to make sure that you are clear on the fact that
-factor, pcf- is not the same as -pca-.  Rencher (2002) pages
415-416 says concerning the "principal component method" of
"factor analysis" that

"... This name is perhaps unfortunate in that it adds to
the confusion between factor analysis and principal
component analysis. ..."

And he goes on to explain more about it.

Assuming you are asking for the same thing in both SPSS and
Stata, I would still not be surprised by a change of sign for
414, Rencher (2002) discusses the nonuniqueness of factor
and still reproduce the same covariance matrix.  Sign flips are a
common event.  The interpretation of the underlying factors
remains fundamentally the same.

factor1
var1   -0.8
var2    0.1
var3   -0.7
var4    0.9
var5    0.7

researchers would say that this factor is comparing var1 and var3
against var4 and var5 (with var2 close to zero and not important
for this factor).  If the signs were flipped for this column, you
would still end up with the same interpretation of it comparing 1
and 3 against 4 and 5.

By the way, the arbitrariness of the sign happens in many other
multivariate techniques.  Heuristically think of it like this --
if one of these multivariate techniques were trying to draw a
picture of your house, they might draw your house or the mirror
image of your house (a sign flip).  Either way, it still is a

Reference:

Rencher, A.C. (2002) Methods of Multivariate Analysis,
2nd Ed., Wiley: New York.

Ken Higbee    khigbee@stata.com
StataCorp     1-800-STATAPC

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